No issue at all. I always store our coach (all year round) with both batteries (only 1 house battery on ours) disconnected. Connect the batteries and fire it up. Whatever the ECU needs to learn it does it when you start it up.
In colder weather I do run it more often and when I do I make sure both the V-10 and the genny are up to operating temperature before shutting them down. That is all: disconnect both batteries, lock it up, and drive away.
Sounds like a great place to store it: Indoors to keep the UV away which will keep your outside nice and also prevent fading inside.
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